How to set up and run your own SFTP server
19th May 2025
Secure file transfer protocol, or SFTP, is essential for businesses requiring secure and reliable data transfer. From financial institutions to healthcare providers, a wide range of organisations operating across various industries rely on SFTP to share sensitive information safely, and for both manual and automated data transfers between systems.
However, configuring an SFTP server is no easy task. It requires a solid understanding of technical requirements, security protocols and best practices. Also, missteps during the configuration process can lead to vulnerabilities, inefficiencies and costly system downtime later.
Whether you’re setting up your first SFTP server or optimising your existing setup, it’s key to understand the challenges and potential pitfalls you could encounter. In this guide, we’ll walk you through the essential steps, highlight common problems and help you avoid errors.

Configuring SFTP servers, step by step
Define your requirements
Before diving into configuring your SFTP server, you should first take a step back to define the scope and purpose of your SFTP server. This should include central questions such as:
Who will be using the server?
What types of files will be transferred?
How much storage capacity is needed?
What security protocols and compliance standards must be met?
Clear answers to these questions will help to guide your decisions regarding server specifications, software choices and user access controls. Skipping this step can mean that your systems are either over-engineered or simply incapable of meeting the needs of users.
Choose the right software and hardware
Your choice of SFTP software can significantly impact your server’s performance as well as its security. Popular open-source options like OpenSSH and ProFTPD are highly configurable but require detailed knowledge of the options and often technical support from other IT/network team members. Managed options can offer ease of use with built-in support, but usually come with an operational or subscription cost.
For hardware, consider factors such as server load, scalability and storage requirements. Many organisations opt for cloud-based or hosted servers due to their flexibility and scalability. However, some businesses may choose on-premises solutions based on factors like data residency policies, internal infrastructure preferences and or specific internal compliance requirements.
Configure authentication and user access
Configuring secure user authentication is one of the most important aspects of setting up an SFTP server. Although password-based authentication is common, using SSH keys – where users generate a private key stored on their device and a public key added to the server – is more secure, as it ensures that only authorised devices with the key can access the server, adding an additional layer of security.
Beyond authentication, set up user roles and implement permissions carefully. Adhere to the principle of least privilege – that is, users should only have access to the files and folders necessary for their allotted tasks. Misconfigured permissions represent a vulnerability that attackers commonly exploit.
Implement security measures
Security has to be at the forefront of your considerations when configuring an SFTP server. Beyond encryption protocols like AES-256, consider implementing these additional security measures:
IP whitelisting: This limits access to the server by specifying approved IP addresses.
Two-factor or multi-factor authentication (2FA/MFA): Adds an extra layer of security for user logins made through a web-based/browser interface.
Chroot jail: Restrict users to specific directories to prevent unauthorised access to the server’s root directory.
Furthermore, you must ensure that software is regularly updated to patch vulnerabilities and use firewalls to block unauthorised traffic. Additionally, make sure that logs are monitored in order to detect and respond to any suspicious activity.
Common problems and how to avoid them
Configuration errors
Mistakes during the setup process, including incorrect permissions and misconfigured firewalls, can cause operational issues and security vulnerabilities. Double-check configuration files and conduct thorough testing before you go live.
Scalability
As your organisation, so will your data transfer needs. Plan for scalability by choosing flexible hardware and software solutions, and regularly reviewing server performance.
Compliance
Industries subject to particularly stringent regulations, such as healthcare and financial services, are required to take especially strict data protection measures. Ensure your SFTP server complies with these standards by consulting with experts and conducting regular audits.
User error
Even the best-configured server can be compromised by user error. Provide training for users and administrators on best practices, such as secure file naming conventions and how to recognise phishing attempts, and ensure that every member of your team understands what’s required of them with regard to cybersecurity and data protection.
Conclusion
Configuring an SFTP server is a process that requires close attention to detail, technical expertise and ongoing maintenance. Following the steps outlined in this guide and proactively addressing common challenges can help to create secure, compliant and efficient SFTP environments.

We provide an all-in-one Secure SFTP Hosting solution!
Need expert support with SFTP hosting? Ridgeon Network specialises secure SFTP hosting solutions tailored to your specific requirements. Get in touch with our team today to find out more about how we can take the hassle out of Secure SFTP hosting.
Get in touch today with your requirements and we will be happy to assist you.